Reference list for the supported programs:

Name: SIMWALK2

Web: ftp://watson.hgen.pitt.edu/pub/simwalk2

Primary reference(s): (Sobel and Lange 1996)

Name: MENDEL

Web: http://www.biomath.medsch.ucla.edu/faculty/klange/software.html

Primary reference(s): (Lange et al. 1988)

Name: ASPEX

Web: ftp://lahmed.stanford.edu/pub/aspex

Primary reference(s): (Hinds and Risch 1996)

Name: GeneHunter-Plus

Web: ftp://galton.uchicago.edu/pub/kong

Primary reference(s): (Kong and Cox 1997)

Name: GeneHunter

Web: http://waldo.wi.mit.edu/ftp/distribution/software/genehunter/gh2/

Primary reference(s): (Kruglyak et al. 1996)

Name: APM and APM Mult

Web: ftp://watson.hgen.pitt.edu/pub/apm

Primary reference(s): (Weeks and Lange 1988)

Name: SLINK, FASTSLINK (Use FASTSLINK instead of SLINK)

Web: ftp://watson.hgen.pitt.edu/pub/slink

Primary reference(s): (Ott 1989; Weeks et al. 1990)

Name: SPLINK

Web: http://www.mrc-bsu.cam.ac.uk/pub/methodology/genetics/

Primary reference(s): (Holmans 1993)

Name: SIMULATE

Web: ftp://linkage.rockefeller.edu/software/simulate

Primary reference(s): (Terwilliger et al. 1993)

Name: S.A.G.E

Web: http://darwin.mhmc.cwru.edu/pub/sage.html

Primary reference(s):

Name: TDTMax

Web: http://www.rdg.ac.uk/AcaDepts/sn/wsn1/dept/APM.html

Primary reference(s): (Morris et al. 1997)

Name: SOLAR

Web: http://www.sfbr.org/sfbr/public/software/solar/solar.html

Primary reference(s): (Blangero and Almasy 1997; Almasy and Blangero 1998)

Name: Vitesse

Web: ftp://watson.hgen.pitt.edu/pub/vitesse/

Primary reference(s): (O'Connell and Weeks 1995)

Name: LINKAGE

Web:ftp://linkage.rockefeller.edu/software/linkage

Primary reference(s): (Lathrop and Lalouel 1984; Lathrop et al. 1986; Lathrop and Lalouel 1988)

Name: ANALYZE package

Web: ftp://linkage.cpmc.columbia.edu/software/analyze

Primary reference(s): (Terwilliger 1996)

Name: hwe

Web:

Primary reference(s): (Guo and Thompson 1992)

Name: Gen

Web:

Primary reference(s): (Lazzeroni and Lange 1997)

Name: S.A.G.E. 4.0

Web: http://http://darwin.cwru.edu/beta/

Primary reference(s): S.A.G.E. [2001]. Statistical Analysis for Genetic Epidemiology, Beta 4.0-9. Computer program package available from the Department of Epidemiology and Biostatistics, Rammelkamp Center for Education and Research, MetroHealth Campus, Case Western Reserve University, Cleveland.

Name: Merlin

Web: http://www.sph.umich.edu/csg/abecasis/Merlin/index.html

Primary reference(s): Merlin-rapid analysis of dense genetic maps using sparse gene flow trees.
Abecasis GR, Cherny SS, Cookson WO and Cardon LR
Nat Genet (2002) 30:97-101

Name: PREST

Web: http://galton.uchicago.edu/~mcpeek/software/prest/

Primary reference(s): Statistical Tests for Detection of Misspecified Relationships by Use of Genome-Screen Data
Mary Sara McPeek and Lei Sun
Department of Statistics, University of Chicago, Chicago
Received January 25, 1999; accepted December 29, 1999; electronically published March 9, 2000.

Name: PAP

Web: http://hasstedt.genetics.utah.edu/