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VNC - Virtual X-windows display
Nucleic Acid Analysis ...
General Sequence Analysis ...EMBOSS - European Molecular Biology Open Software SuiteSTADEN - General Sequence Analysis Package
RNA Analysis ...VIENNA - RNA structure analysis
Sequence Editors and Formats ...CLUSTALX - Graphical Alignment of SequencesSEAVIEW - A multiple sequence alignment editor
Phylogenetics ...Phylip - Phylogeny Inference PackagePuzzle - Reconstructing tree topologies with quartet puzzlingMrBayes - Bayesian inference of phylogeny using MCMC
Mapping ...CRIMAP - Construction of multilocus linkage maps
Linkage ...
GLUE - Genetic Linkage User Environment
General Linkage ...FASTLINK - 'Fastlink' versions of the original LINKAGE packageVITESSE - Rapid Multipoint Likelihood CalculationAPM - Affected Pedigree Member method programsSIMWALK2 - Multipoint analyses using simulated annealingSPLINK - Linkage analysis using affected sib pairsSIMIBD - Statistics of shared markers of affected relativesGENEHUNTER - Multipoint analysis of pedigree dataMERLIN - Multipoint Engine for Rapid Likelihood InferenceAssociation and TDT ...TRANSMIT - Tests association of marker and diseaseUNPHASED - Association and TDT for haplotypes
Miscellaneous Linkage Programs ...GENEHUNTER-PLUS - Modification of genehunterSNPHAP - Haplotype frequency estimation
Linkage Utilities ...QUIKLINK - Alternative to LCPMEGA2 - Linkage file format conversion utility
UtilitiesUnix ShellSimple WWW file manager
Pilot - Character-based file managerCDE file managerFTPPico - Simple editor with on-screen helpGnu emacs - Useful X-Windows editor
Alphabetic listing of all options
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