Bioinformatics Applications VIENNA - RNA structure analysis

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Vienna package for RNA structure analysis

• predict minimum free energy secondary structures
• calculate the partition function for the ensemble of structures
• calculate suboptimal structures in given energy range
• predict melting curves
• search for sequences folding into a given structure
• compare secondary structures including pairwise alignment.

AnalyseDists - Analyse a distance matrix
AnalyseSeqs - Analyse a set of sequences of common length
RNAdistance - Calculate distances of RNA secondary structures

RNAeval     - Calculate energy of RNA sequences on given secondary structure
RNAfold     - Calculate secondary structures of RNAs
RNAheat     - Calculate specific heat of RNAs

RNAinverse  - Find RNA sequences with given secondary structure
RNApdist    - Find distances of thermodynamic RNA secondary structures ensembles
RNAplot     - Draw RNA Secondary Structures
RNAsubopt   - Calculate suboptimal secondary structures of RNAs

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